acceleration factor
UniFS: Unified Multi-Contrast MRI Reconstruction via Frequency-Spatial Fusion
Li, Jialin, Ren, Yiwei, Pan, Kai, Wei, Dong, Cheng, Pujin, Wu, Xian, Tang, Xiaoying
Recently, Multi-Contrast MR Reconstruction (MCMR) has emerged as a hot research topic that leverages high-quality auxiliary modalities to reconstruct undersampled target modalities of interest. However, existing methods often struggle to generalize across different k-space undersampling patterns, requiring the training of a separate model for each specific pattern, which limits their practical applicability. To address this challenge, we propose UniFS, a Unified Frequency-Spatial Fusion model designed to handle multiple k-space undersampling patterns for MCMR tasks without any need for retraining. UniFS integrates three key modules: a Cross-Modal Frequency Fusion module, an Adaptive Mask-Based Prompt Learning module, and a Dual-Branch Complementary Refinement module. These modules work together to extract domain-invariant features from diverse k-space undersampling patterns while dynamically adapt to their own variations. Another limitation of existing MCMR methods is their tendency to focus solely on spatial information while neglect frequency characteristics, or extract only shallow frequency features, thus failing to fully leverage complementary cross-modal frequency information. To relieve this issue, UniFS introduces an adaptive prompt-guided frequency fusion module for k-space learning, significantly enhancing the model's generalization performance. We evaluate our model on the BraTS and HCP datasets with various k-space undersampling patterns and acceleration factors, including previously unseen patterns, to comprehensively assess UniFS's generalizability. Experimental results across multiple scenarios demonstrate that UniFS achieves state-of-the-art performance. Our code is available at https://github.com/LIKP0/UniFS.
SpeedAug: Policy Acceleration via Tempo-Enriched Policy and RL Fine-Tuning
Recent advances in robotic policy learning have enabled complex manipulation in real-world environments, yet the execution speed of these policies often lags behind hardware capabilities due to the cost of collecting faster demonstrations. Existing works on policy acceleration reinterpret action sequence for unseen execution speed, thereby encountering distributional shifts from the original demonstrations. Reinforcement learning is a promising approach that adapts policies for faster execution without additional demonstration, but its unguided exploration is sample inefficient. We propose SpeedAug, an RL-based policy acceleration framework that efficiently adapts pre-trained policies for faster task execution. SpeedAug constructs behavior prior that encompasses diverse tempos of task execution by pre-training a policy on speed-augmented demonstrations. Empirical results on robotic manipulation benchmarks show that RL fine-tuning initialized from this tempo-enriched policy significantly improves the sample efficiency of existing RL and policy acceleration methods while maintaining high success rate.
Simultaneous Image Quality Improvement and Artefacts Correction in Accelerated MRI
Kanli, Georgia, Perlo, Daniele, Boudissa, Selma, Jirik, Radovan, Keunen, Olivier
MR data are acquired in the frequency domain, known as k-space. Acquiring high-quality and high-resolution MR images can be time-consuming, posing a significant challenge when multiple sequences providing complementary contrast information are needed or when the patient is unable to remain in the scanner for an extended period of time. Reducing k-space measurements is a strategy to speed up acquisition, but often leads to reduced quality in reconstructed images. Additionally, in real-world MRI, both under-sampled and full-sampled images are prone to artefacts, and correcting these artefacts is crucial for maintaining diagnostic accuracy. Deep learning methods have been proposed to restore image quality from under-sampled data, while others focused on the correction of artefacts that result from the noise or motion. No approach has however been proposed so far that addresses both acceleration and artefacts correction, limiting the performance of these models when these degradation factors occur simultaneously. To address this gap, we present a method for recovering high-quality images from under-sampled data with simultaneously correction for noise and motion artefact called USArt (Under-Sampling and Artifact correction model). Customized for 2D brain anatomical images acquired with Cartesian sampling, USArt employs a dual sub-model approach. The results demonstrate remarkable increase of signal-to-noise ratio (SNR) and contrast in the images restored. Various under-sampling strategies and degradation levels were explored, with the gradient under-sampling strategy yielding the best outcomes. We achieved up to 5x acceleration and simultaneously artefacts correction without significant degradation, showcasing the model's robustness in real-world settings.
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Conditional Denoising Diffusion Model-Based Robust MR Image Reconstruction from Highly Undersampled Data
Alsubaie, Mohammed, Liu, Wenxi, Gu, Linxia, Andronesi, Ovidiu C., Perera, Sirani M., Li, Xianqi
Magnetic Resonance Imaging (MRI) is a critical tool in modern medical diagnostics, yet its prolonged acquisition time remains a critical limitation, especially in time-sensitive clinical scenarios. While undersampling strategies can accelerate image acquisition, they often result in image artifacts and degraded quality. Recent diffusion models have shown promise for reconstructing high-fidelity images from undersampled data by learning powerful image priors; however, most existing approaches either (i) rely on unsupervised score functions without paired supervision or (ii) apply data consistency only as a post-processing step. In this work, we introduce a conditional denoising diffusion framework with iterative data-consistency correction, which differs from prior methods by embedding the measurement model directly into every reverse diffusion step and training the model on paired undersampled-ground truth data. This hybrid design bridges generative flexibility with explicit enforcement of MRI physics. Experiments on the fastMRI dataset demonstrate that our framework consistently outperforms recent state-of-the-art deep learning and diffusion-based methods in SSIM, PSNR, and LPIPS, with LPIPS capturing perceptual improvements more faithfully. These results demonstrate that integrating conditional supervision with iterative consistency updates yields substantial improvements in both pixel-level fidelity and perceptual realism, establishing a principled and practical advance toward robust, accelerated MRI reconstruction.
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- Health & Medicine > Therapeutic Area > Neurology (1.00)
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Learning spatiotemporal trajectories from manifold-valued longitudinal data
Jean-Baptiste SCHIRATTI, Stéphanie ALLASSONNIERE, Olivier Colliot, Stanley DURRLEMAN
We propose a Bayesian mixed-effects model to learn typical scenarios of changes from longitudinal manifold-valued data, namely repeated measurements of the same objects or individuals at several points in time. The model allows to estimate a group-average trajectory in the space of measurements. Random variations of this trajectory result from spatiotemporal transformations, which allow changes in the direction of the trajectory and in the pace at which trajectories are followed. The use of the tools of Riemannian geometry allows to derive a generic algorithm for any kind of data with smooth constraints, which lie therefore on a Riemannian manifold. Stochastic approximations of the Expectation-Maximization algorithm is used to estimate the model parameters in this highly non-linear setting. The method is used to estimate a data-driven model of the progressive impairments of cognitive functions during the onset of Alzheimer's disease. Experimental results show that the model correctly put into correspondence the age at which each individual was diagnosed with the disease, thus validating the fact that it effectively estimated a normative scenario of disease progression. Random effects provide unique insights into the variations in the ordering and timing of the succession of cognitive impairments across different individuals.
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CUTE-MRI: Conformalized Uncertainty-based framework for Time-adaptivE MRI
Fischer, Paul, Morshuis, Jan Nikolas, Küstner, Thomas, Baumgartner, Christian
Magnetic Resonance Imaging (MRI) offers unparalleled soft-tissue contrast but is fundamentally limited by long acquisition times. While deep learning-based accelerated MRI can dramatically shorten scan times, the reconstruction from undersampled data introduces ambiguity resulting from an ill-posed problem with infinitely many possible solutions that propagates to downstream clinical tasks. This uncertainty is usually ignored during the acquisition process as acceleration factors are often fixed a priori, resulting in scans that are either unnecessarily long or of insufficient quality for a given clinical endpoint. This work introduces a dynamic, uncertainty-aware acquisition framework that adjusts scan time on a per-subject basis. Our method leverages a probabilistic reconstruction model to estimate image uncertainty, which is then propagated through a full analysis pipeline to a quantitative metric of interest (e.g., patellar cartilage volume or cardiac ejection fraction). We use conformal prediction to transform this uncertainty into a rigorous, calibrated confidence interval for the metric. During acquisition, the system iteratively samples k-space, updates the reconstruction, and evaluates the confidence interval. The scan terminates automatically once the uncertainty meets a user-predefined precision target. We validate our framework on both knee and cardiac MRI datasets. Our results demonstrate that this adaptive approach reduces scan times compared to fixed protocols while providing formal statistical guarantees on the precision of the final image. This framework moves beyond fixed acceleration factors, enabling patient-specific acquisitions that balance scan efficiency with diagnostic confidence, a critical step towards personalized and resource-efficient MRI.
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- Health & Medicine > Therapeutic Area > Cardiology/Vascular Diseases (1.00)
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KP-INR: A Dual-Branch Implicit Neural Representation Model for Cardiac Cine MRI Reconstruction
Lyu, Donghang, Staring, Marius, Doneva, Mariya, Lamb, Hildo J., Pezzotti, Nicola
Cardiac Magnetic Resonance (CMR) imaging is a non-invasive method for assessing cardiac structure, function, and blood flow. Cine MRI extends this by capturing heart motion, providing detailed insights into cardiac mechanics. To reduce scan time and breath-hold discomfort, fast acquisition techniques have been utilized at the cost of lowering image quality. Recently, Implicit Neural Representation (INR) methods have shown promise in unsupervised reconstruction by learning coordinate-to-value mappings from undersampled data, enabling high-quality image recovery. However, current existing INR methods primarily focus on using coordinate-based positional embeddings to learn the mapping, while overlooking the feature representations of the target point and its neighboring context. In this work, we propose KP-INR, a dual-branch INR method operating in k-space for cardiac cine MRI reconstruction: one branch processes the positional embedding of k-space coordinates, while the other learns from local multi-scale k-space feature representations at those coordinates. By enabling cross-branch interaction and approximating the target k-space values from both branches, KP-INR can achieve strong performance on challenging Cartesian k-space data. Experiments on the CMRxRecon2024 dataset confirms its improved performance over baseline models and highlights its potential in this field.
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Low-Rank Augmented Implicit Neural Representation for Unsupervised High-Dimensional Quantitative MRI Reconstruction
Zhang, Haonan, Lao, Guoyan, Zhang, Yuyao, Wei, Hongjiang
--Quantitative magnetic resonance imaging (qMRI) provides tissue-specific parameters vital for clinical diagnosis. Although simultaneous multi-parametric qMRI (MP-qMRI) technologies enhance imaging efficiency, robustly reconstructing qMRI from highly undersampled, high-dimensional measurements remains a significant challenge. This difficulty arises primarily because current reconstruction methods that rely solely on a single prior or physics-informed model to solve the highly ill-posed inverse problem, which often leads to suboptimal results. T o overcome this limitation, we propose LoREIN, a novel unsupervised and dual-prior-integrated framework for accelerated 3D MP-qMRI reconstruction. T echnically, LoREIN incorporates both low-rank prior and continuity prior via low-rank representation (LRR) and implicit neural representation (INR), respectively, to enhance reconstruction fidelity. The powerful continuous representation of INR enables the estimation of optimal spatial bases within the low-rank subspace, facilitating high-fidelity reconstruction of weighted images. Simultaneously, the predicted multi-contrast weighted images provide essential structural and quantitative guidance, further enhancing the reconstruction accuracy of quantitative parameter maps. Furthermore, our work introduces a zero-shot learning paradigm with broad potential in complex spatiotemporal and high-dimensional image reconstruction tasks, further advancing the field of medical imaging.
- Health & Medicine > Therapeutic Area (1.00)
- Health & Medicine > Diagnostic Medicine > Imaging (0.86)
Deep learning of personalized priors from past MRI scans enables fast, quality-enhanced point-of-care MRI with low-cost systems
Oved, Tal, Lena, Beatrice, Najac, Chloé F., Shen, Sheng, Rosen, Matthew S., Webb, Andrew, Shimron, Efrat
Magnetic resonance imaging (MRI) offers superb-quality images, but its accessibility is limited by high costs, posing challenges for patients requiring longitudinal care. Low-field MRI provides affordable imaging with low-cost devices but is hindered by long scans and degraded image quality, including low signal-to-noise ratio (SNR) and tissue contrast. We propose a novel healthcare paradigm: using deep learning to extract personalized features from past standard high-field MRI scans and harnessing them to enable accelerated, enhanced-quality follow-up scans with low-cost systems. To overcome the SNR and contrast differences, we introduce ViT-Fuser, a feature-fusion vision transformer that learns features from past scans, e.g. those stored in standard DICOM CDs. We show that \textit{a single prior scan is sufficient}, and this scan can come from various MRI vendors, field strengths, and pulse sequences. Experiments with four datasets, including glioblastoma data, low-field ($50mT$), and ultra-low-field ($6.5mT$) data, demonstrate that ViT-Fuser outperforms state-of-the-art methods, providing enhanced-quality images from accelerated low-field scans, with robustness to out-of-distribution data. Our freely available framework thus enables rapid, diagnostic-quality, low-cost imaging for wide healthcare applications.
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